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1

BioNumQA-BERT : answering biomedical questions using numerical facts with a deep language representation model: answering biomedical questions using numerical facts with a deep lan...

by Wu, Ye, Ting, Hing-Fung, Lam, Tak-Wah, Luo, Ruibang
Published in Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics (2021)

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Electronic Proceeding

2

SARS‐CoV ‐2 biology and variants: anticipation of viral evolution and what needs to be done

by Luo, Ruibang, Delaunay‐Moisan, Agnès, Timmis, Kenneth, Danchin, Antoine
Published in Environmental Microbiology (2021)

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E-Article

3

16GT: a fast and sensitive variant caller using a 16-genotype probabilistic model

by Luo, Ruibang, Schatz, Michael C., Salzberg, Steven L.
Published in GigaScience (2017)

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E-Article

4

RENET2: high-performance full-text gene–disease relation extraction with iterative training data expansion

by Su, Junhao, Wu, Ye, Ting, Hing-Fung, Lam, Tak-Wah, Luo, Ruibang
Published in NAR Genomics and Bioinformatics (2021)

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E-Article

5

Translocator : local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long reads: local realignment and global remapping...

by Wu, Ye, Luo, Ruibang, Lam, Tak-Wah, Ting, Hing-Fung, Wang, Junwen
Published in Proceedings of the 11th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics (2020)

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Electronic Proceeding

6

CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning

by Zhang, Yifan, Liu, Chi-Man, Leung, Henry C.M., Luo, Ruibang, Lam, Tak-Wah
Published in iScience (2020)

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E-Article

7

Transcriptome Analysis of Acute Phase Liver Graft Injury in Liver Transplantation

by Lee, Nikki, Wu, Haiyang, Ng, Kevin, Luo, Ruibang, Lam, Tak-Wah, Lo, Chung-Mau, Man, Kwan
Published in Biomedicines (2018)

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E-Article

8

LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning

by Luo, Ruibang, Sedlazeck, Fritz J., Darby, Charlotte A., Kelly, Stephen M., Schatz, Michael C.
Published in Computational and Structural Biotechnology Journal (2017)

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E-Article

9

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

by Li, Dinghua, Liu, Chi-Man, Luo, Ruibang, Sadakane, Kunihiko, Lam, Tak-Wah
Published in Bioinformatics (2015)

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E-Article

10

FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data

by Wang, Weixin, Wang, Panwen, Xu, Feng, Luo, Ruibang, Wong, Maria Pik, Lam, Tak-Wah, Wang, Junwen
Published in Bioinformatics (2014)

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E-Article

11

Applications and potentials of nanopore sequencing in the (epi)genome and (epi)transcriptome era

by Xie, Shangqian, Leung, Amy Wing-Sze, Zheng, Zhenxian, Zhang, Dake, Xiao, Chuanle, Luo, Ruibang, Luo, Ming, Zhang, Shoudong
Published in The Innovation (2021)

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E-Article

12

BASE: a practical de novo assembler for large genomes using long NGS reads

by Liu, Binghang, Liu, Chi-Man, Li, Dinghua, Li, Yingrui, Ting, Hing-Fung, Yiu, Siu-Ming, Luo, Ruibang, Lam, Tak-Wah
Published in BMC Genomics (2016)

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E-Article

13

BALSA: integrated secondary analysis for whole-genome and whole-exome sequencing, accelerated by GPU

by Luo, Ruibang, Wong, Yiu-Lun, Law, Wai-Chun, Lee, Lap-Kei, Cheung, Jeanno, Liu, Chi-Man, Lam, Tak-Wah
Published in PeerJ (2014)

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E-Article

14

Efficient SNP-sensitive alignment and database-assisted SNP calling for low coverage samples

by Luo, Ruibang, Yu, Chang, Liu, Chi-Man, Lam, Tak-Wah, Wong, Thomas, Yiu, Siu-Ming, Li, Ruiqiang, Ting, Hing-Fung
Published in Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine - BCB '12 (2012)

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15

Identification of Cooperative Gene Regulation Among Transcription Factors, LncRNAs, and MicroRNAs in Diabetic Nephropathy Progression

by Chen, Ling, Wu, Binbin, Wang, Shaobin, Xiong, Yu, Zhou, Boya, Cheng, Xianyi, Zhou, Tao, Luo, Ruibang, Lam, Tak-Wah, Yan, Bin, Chen, Junhui
Published in Frontiers in Genetics (2020)

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E-Article

16

AC-DIAMOND v1: accelerating large-scale DNA–protein alignment

by Mai, Huijun, Zhang, Yifan, Li, Dinghua, Leung, Henry Chi-Ming, Luo, Ruibang, Wong, Chi-Kwong, Ting, Hing-Fung, Lam, Tak-Wah
Published in Bioinformatics (2018)

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E-Article

17

database.bio: a web application for interpreting human variations

by Ou, Min, Ma, Ricky, Cheung, Jeanno, Lo, Katie, Yee, Patrick, Luo, Tewei, Chan, T.L., Au, Chun Hang, Kwong, Ava, Luo, Ruibang, Lam, Tak-Wah
Published in Bioinformatics (2015)

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E-Article

18

Drug Repurposing for the Treatment of COVID‐19: A Knowledge Graph Approach

by Yan, Vincent K. C., Li, Xiaodong, Ye, Xuxiao, Ou, Min, Luo, Ruibang, Zhang, Qingpeng, Tang, Bo, Cowling, Benjamin J., Hung, Ivan, Siu, Chung Wah, Wong, Ian C. K., Cheng, Reynold C. K., Chan, Esther W.
Published in Advanced Therapeutics (2021)

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E-Article

19

Serine peptidase inhibitor Kazal type 1 (SPINK1) as novel downstream effector of the cadherin-17/β-catenin axis in hepatocellular carcinoma

by Shek, Felix H., Luo, Ruibang, Lam, Brian Y. H., Sung, Wing Kin, Lam, Tak-Wah, Luk, John M., Leung, Ming Sum, Chan, Kin Tak, Wang, Hector K., Chan, Chung Man, Poon, Ronnie T., Lee, Nikki P.
Published in Cellular Oncology (2017)

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E-Article

20

First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (Formerly Scedosporium prolificans)

by Luo, Ruibang, Zimin, Aleksey, Workman, Rachael, Fan, Yunfan, Pertea, Geo, Grossman, Nina, Wear, Maggie P, Jia, Bei, Miller, Heather, Casadevall, Arturo, Timp, Winston, Zhang, Sean X, Salzberg, Steven L
Published in G3 Genes|Genomes|Genetics (2017)

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