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by Lesjak, Michaela S, Marchan, Rosemarie, Stewart, Joanna D, Rempel, Eugen, Rahnenführer, Jörg, Hengstler, Jan G
Published in Cell Adhesion & Migration (2014)

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7

Motor neurons control blood vessel patterning in the developing spinal cord

by Himmels, Patricia, Paredes Ugarte, Isidora B., Adler, Heike, Karakatsani, Andromachi, Luck, Robert, Marti, Hugo, Ermakova, Olga, Rempel, Eugen, Ruiz de Almodóvar, Carmen
Published in Nature Communications (2017)

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8

Integration of light and metabolic signals for stem cell activation at the shoot apical meristem

by Pfeiffer, Anne, Janocha, Denis, Dong, Yihan, Medzihradszky, Anna, Daum, Gabor, Suzaki, Takuya, Forner, Joachim, Rempel, Eugen, Wirtz, Markus, Hell, Rüdiger, Lohmann, Jan U.
Published in eLife (2016)

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9

Subclassification, survival prediction and drug target analyses of chemotherapy-naïve muscle-invasive bladder cancer with a molecular screening

by Rinaldetti, Sebastien, Rempel, Eugen, Worst, Thomas Stefan, Eckstein, Markus, Steidler, Annette, Weiss, Cleo Aaron, Bolenz, Christian, Hartmann, Arndt, Erben, Philipp
Published in Oncotarget (2018)

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10

WEADE: A workflow for enrichment analysis and data exploration

by Trost, Nils, Rempel, Eugen, Ermakova, Olga, Tamirisa, Srividya, Pârcălăbescu, Letiția, Boutros, Michael, Lohmann, Jan U., Lohmann, Ingrid
Published in PLOS ONE (2018)

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11

Evaluation of TMB estimates for the prediction of response to immune checkpoint blockage.

by Budczies, Jan, Allgäuer, Michael, Litchfield, Kevin, Rempel, Eugen, Christopoulos, Petros, Kazdal, Daniel, Endris, Volker, Thomas, Michael, Fröhling, Stefan, Peters, Solange, Swanton, Charles, Schirmacher, Peter, Stenzinger, Albrecht
Published in Journal of Clinical Oncology (2019)

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12

Decoding the Regulatory Logic of the Drosophila Male Stem Cell System

by Tamirisa, Srividya, Papagiannouli, Fani, Rempel, Eugen, Ermakova, Olga, Trost, Nils, Zhou, Jun, Mundorf, Juliane, Brunel, Samantha, Ruhland, Naima, Boutros, Michael, Lohmann, Jan U., Lohmann, Ingrid
Published in Cell Reports (2018)

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13

Decoding the Regulatory Logic of the Drosophila Male Stem Cell System

by Papagiannouli, Fani, Tamirisa, Srividya, Rempel, Eugen, Ermakova, Olga, Trost, Nils, Zhou, Jun, Mundorf, Juliane, Brunel, Samantha, Ruhland, Naima, Boutros, Michael, Lohmann, Jan U., Lohmann, Ingrid
Published in SSRN Electronic Journal (2018)

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14

The molecular signature of AML with increased ALDH activity suggests a stem cell origin

by Blume, Rachel, Rempel, Eugen, Manta, Linda, Saeed, Borhan R., Wang, Wenwen, Raffel, Simon, Ermakova, Olga, Eckstein, Volker, Benes, Vladimir, Trumpp, Andreas, Ho, Anthony D., Lutz, Christoph
Published in Leukemia & Lymphoma (2018)

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15

Stem Cell Transcriptome Responses and Corresponding Biomarkers That Indicate the Transition from Adaptive Responses to Cytotoxicity

by Waldmann, Tanja, Grinberg, Marianna, König, André, Rempel, Eugen, Schildknecht, Stefan, Henry, Margit, Holzer, Anna-Katharina, Dreser, Nadine, Shinde, Vaibhav, Sachinidis, Agapios, Rahnenführer, Jörg, Hengstler, Jan G., Leist, Marcel
Published in Chemical Research in Toxicology (2017)

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16

Human Pluripotent Stem Cell Based Developmental Toxicity Assays for Chemical Safety Screening and Systems Biology Data Generation

by Shinde, Vaibhav, Klima, Stefanie, Sureshkumar, Perumal Srinivasan, Meganathan, Kesavan, Jagtap, Smita, Rempel, Eugen, Rahnenführer, Jörg, Hengstler, Jan Georg, Waldmann, Tanja, Hescheler, Jürgen, Leist, Marcel, Sachinidis, Agapios
Published in Journal of Visualized Experiments (2015)

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17

Design Principles of Concentration-Dependent Transcriptome Deviations in Drug-Exposed Differentiating Stem Cells

by Waldmann, Tanja, Rempel, Eugen, Balmer, Nina V., König, André, Kolde, Raivo, Gaspar, John Antonydas, Henry, Margit, Hescheler, Jürgen, Sachinidis, Agapios, Rahnenführer, Jörg, Hengstler, Jan G., Leist, Marcel
Published in Chemical Research in Toxicology (2014)

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18

RNA-based detection of gene fusions in formalin-fixed and paraffin-embedded solid cancer samples

by Kirchner, Martina, Neumann, Olaf, Volckmar, Anna-Lena, Stögbauer, Fabian, Allgäuer, Michael, Kazdal, Daniel, Budczies, Jan, Rempel, Eugen, Brandt, Regine, Talla, Suranand Babu, Winterfeld, Moritz von, Leichsenring, Jonas, Bochtler, Tilmann, Krämer, Alwin, Springfeld, Christoph, Schirmacher, Peter, Penzel, Roland, Endris, Volker, Stenzinger, Albrecht
Published in Cancers (2019)

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19

A transcriptome-based classifier to identify developmental toxicants by stem cell testing: design, validation and optimization for histone deacetylase inhibitors

by Rempel, Eugen, Hölting, Lisa, Waldmann, Tanja, Balmer, Nina Verena, Schildknecht, Stefan, Grinberg, Marianna, Das Gaspar, John Antony, Shinde, Vaibhav, Stöber, Regina, Marchan, Rosemarie, Thriel, Christoph van, Liebing, Julia, Meisig, Johannes, Blüthgen, Nils, Sachinidis, Agapios, Rahnenführer, Jörg, Hengstler, Jan Georg, Leist, Marcel
published 2015

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20

Immuno‐oncology gene expression profiling of formalin‐fixed and paraffin‐embedded clear cell renal cell carcinoma: Performance comparison of the NanoString nCounter...

by Talla, Suranand B., Rempel, Eugen, Endris, Volker, Jenzer, Maximilian, Allgäuer, Michael, Schwab, Constantin, Kazdal, Daniel, Stögbauer, Fabian, Volckmar, Anna‐Lena, Kocsmar, Ildiko, Neumann, Olaf, Schirmacher, Peter, Zschäbitz, Stefanie, Duensing, Stefan, Budczies, Jan, Stenzinger, Albrecht, Kirchner, Martina
Published in Genes, Chromosomes and Cancer (2020)

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