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1

SOAPsnv: An integrated tool for somatic single-nucleotide variants detection with or without normal tissues in cancer genome.

by Shi, Yujian
Published in Journal of Clinical Oncology (2014)

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2

5.2: Invited Paper: A Method for Measuring the Relationship between Phase Retardation and Grayscale of LCoS Based on Binary Grating‐Diffraction Efficiency

by Yang, Shiyi, Yang, H., Qin, Lang, Shi, Yujian, Li, Qing
Published in SID Symposium Digest of Technical Papers (2021)

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3

Measuring the Relationship between Grayscale and Phase Retardation of LCoS based on Binary Optics

by Yang, Shiyi, Yang, H., Qin, Lang, Shi, Yujian, Li, Qing
Published in SID Symposium Digest of Technical Papers (2020)

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4

Molecular Profiling Reveals Common and Specific Development Processes in Different Types of Gynecologic Cancers

by Guo, Yuanli, Liu, Junfeng, Luo, Jiaqi, You, Xiaobin, Weng, Hui, Wang, Minyi, Ouyang, Ting, Li, Xiao, Liao, Xiaoming, Wang, Maocai, Lan, Zhaoji, Shi, Yujian, Chen, Shan
Published in Frontiers in Oncology (2020)

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5

Genetic Deletion of miR-430 Disrupts Maternal-Zygotic Transition and Embryonic Body Plan

by Liu, Yun, Zhu, Zeyao, Ho, Idy H. T., Shi, Yujian, Li, Jianzhen, Wang, Xia, Chan, Matthew T. V., Cheng, Christopher H. K.
Published in Frontiers in Genetics (2020)

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6

Hydrogen Peroxide Is Involved in β-Cyclodextrin-hemin Complex-Induced Lateral Root Formation in Tomato Seedlings

by Cui, Weiti, Zhu, Dan, Shen, Wenbiao, Mei, Yudong, Hu, Dekun, Shi, Yujian, Ren, Yong, Shen, Wei, Gu, Quan, Xu, Daokun, Huang, Liqin
Published in Frontiers in Plant Science (2017)

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7

Whole-genome sequencing of matched primary and metastatic hepatocellular carcinomas

by Ouyang, Limei, Lee, Jeeyun, Park, Cheol-Keun, Mao, Mao, Shi, Yujian, Gong, Zhuolin, Zheng, Hancheng, Li, Yingrui, Zhao, Yonggang, Wang, Guangbiao, Fu, Huiling, Kim, Jhingook, Lim, Ho Yeong
Published in BMC Med Genomics (2014)

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8

pIRS: Profile-based Illumina pair-end reads simulator

by Hu, Xuesong, Yuan, Jianying, Shi, Yujian, Lu, Jianliang, Liu, Binghang, Li, Zhenyu, Chen, Yanxiang, Mu, Desheng, Zhang, Hao, Li, Nan, Yue, Zhen, Bai, Fan, Li, Heng, Fan, Wei
Published in Bioinformatics (2012)

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9

Assessing concordance among human, in silico predictions and functional assays on genetic variant classification

by Luo, Jiaqi, Zhou, Tianliangwen, You, Xiaobin, Zi, Yi, Li, Xiaoting, Wu, Yangming, Lan, Zhaoji, Zhi, Qihuan, Yi, Dandan, Xu, Lei, Li, Ang, Zhong, Zaixuan, Zhu, Mei, Sun, Gang, Zhu, Tao, Rao, Jianmei, Lin, Luhua, Sang, Jianfeng, Shi, Yujian
Published in Bioinformatics (2019)

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10

Germline mutation landscape of Chinese patients with familial breast/ovarian cancer in a panel of 22 susceptibility genes

by Wang, Jiayu, Li, Weiwei, Shi, Yujian, Huang, Yan, Sun, Tao, Tang, Lili, Lu, Qing, Lei, Qiumo, Liao, Ning, Jin, Feng, Li, Hui, Huang, Tao, Qian, Jun, Pang, Danmei, Wang, Shusen, Fan, Peizhi, Wu, Xinhong, Lin, Ying, Qin, Haiyan, Xu, Binghe
Published in Cancer Medicine (2019)

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11

Identifying Human Genome-Wide CNV, LOH and UPD by Targeted Sequencing of Selected Regions

by Wang, Yu, Li, Wei, Xia, Yingying, Wang, Chongzhi, Tang, Y. Tom, Guo, Wenying, Li, Jinliang, Zhao, Xia, Sun, Yepeng, Hu, Juan, Zhen, Hefu, Zhang, Xiandong, Chen, Chao, Shi, Yujian, Li, Lin, Cao, Hongzhi, Du, Hongli, Li, Jian
Published in PLOS ONE (2015)

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12

Novel host genetic variations associated with spontaneous clearance of a single-source outbreak of HCV1b infections

by You, Hong, Liu, Sandu, Xie, Yong, Cong, Rui, Sun, Yameng, Ren, Jingjing, Wei, Kangfei, Jin, Xin, Shi, Yujian, Zhang, Haiying, Li, Jie, Wei, Lai, Zhuang, Hui, Cheng, Mingliang, Jia, Jidong
Published in BMJ Open Gastroenterology (2014)

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13

Targeted Genotyping Identifies Susceptibility Locus in Brain-derived Neurotrophic Factor Gene for Chronic Postsurgical Pain

by Tian, Yuanyuan, Liu, Xiaodong, Jia, Mingzhong, Yu, Hui, Lichtner, Peter, Shi, Yujian, Meng, Zhaoyu, Kou, Shanglong, Ho, Idy H. T., Jia, Bo, Cheng, Benny C. P., Lam, Carmen K. M., Tsang, Sharon, Wong, Sunny H., Yu, Jun, Cheng, Christopher H. K., Gin, Tony, Wu, William K. K., Chen, Zheyu, Chan, Matthew T. V.
Published in Anesthesiology (2018)

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14

Erratum: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

by Luo, Ruibang, Liu, Binghang, Xie, Yinlong, Li, Zhenyu, Huang, Weihua, Yuan, Jianying, He, Guangzhu, Chen, Yanxiang, Pan, Qi, Liu, Yunjie, Tang, Jingbo, Wu, Gengxiong, Zhang, Hao, Shi, Yujian, Liu, Yong, Yu, Chang, Wang, Bo, Lu, Yao, Han, Changlei, Cheung, David W., Yiu, Siu-Ming, Peng, Shaoliang, Xiaoqian, Zhu, Liu, Guangming, Liao, Xiangke, Li, Yingrui, Yang, Huanming, Wang, Jian, Lam, Tak-Wah, Wang, Jun
Published in GigaScience (2015)

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15

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

by Luo, Ruibang, Liu, Binghang, Xie, Yinlong, Li, Zhenyu, Huang, Weihua, Yuan, Jianying, He, Guangzhu, Chen, Yanxiang, Pan, Qi, Liu, Yunjie, Tang, Jingbo, Wu, Gengxiong, Zhang, Hao, Shi, Yujian, Liu, Yong, Yu, Chang, Wang, Bo, Lu, Yao, Han, Changlei, Cheung, David W, Yiu, Siu-Ming, Peng, Shaoliang, Xiaoqian, Zhu, Liu, Guangming, Liao, Xiangke, Li, Yingrui, Yang, Huanming, Wang, Jian, Lam, Tak-Wah, Wang, Jun
Published in GigaScience (2012)

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16

Genes Contributing to Pain Sensitivity in the Normal Population: An Exome Sequencing Study

by Williams, Frances M. K., Scollen, Serena, Cao, Dandan, Memari, Yasin, Hyde, Craig L., Zhang, Baohong, Sidders, Benjamin, Ziemek, Daniel, Shi, Yujian, Harris, Juliette, Harrow, Ian, Dougherty, Brian, Malarstig, Anders, McEwen, Robert, Stephens, Joel C., Patel, Ketan, Menni, Cristina, Shin, So-Youn, Hodgkiss, Dylan, Surdulescu, Gabriela, He, Wen, Jin, Xin, McMahon, Stephen B., Soranzo, Nicole, John, Sally, Wang, Jun, Spector, Tim D.
Published in PLoS Genetics (2012)

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17

Whole-Genome Sequencing in Autism Identifies Hot Spots for De Novo Germline Mutation

by Michaelson, Jacob J., Shi, Yujian, Gujral, Madhusudan, Zheng, Hancheng, Malhotra, Dheeraj, Jin, Xin, Jian, Minghan, Liu, Guangming, Greer, Douglas, Bhandari, Abhishek, Wu, Wenting, Corominas, Roser, Peoples, Áine, Koren, Amnon, Gore, Athurva, Kang, Shuli, Lin, Guan Ning, Estabillo, Jasper, Gadomski, Therese, Singh, Balvindar, Zhang, Kun, Akshoomoff, Natacha, Corsello, Christina, McCarroll, Steven, Iakoucheva, Lilia M., Li, Yingrui, Wang, Jun, Sebat, Jonathan
Published in Cell (2012)

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18

Detection of Clinically Relevant Genetic Variants in Autism Spectrum Disorder by Whole-Genome Sequencing

by Jiang, Yong-hui, Yuen, Ryan K.C., Jin, Xin, Wang, Mingbang, Chen, Nong, Wu, Xueli, Ju, Jia, Mei, Junpu, Shi, Yujian, He, Mingze, Wang, Guangbiao, Liang, Jieqin, Wang, Zhe, Cao, Dandan, Carter, Melissa T., Chrysler, Christina, Drmic, Irene E., Howe, Jennifer L., Lau, Lynette, Marshall, Christian R., Merico, Daniele, Nalpathamkalam, Thomas, Thiruvahindrapuram, Bhooma, Thompson, Ann, Uddin, Mohammed, Walker, Susan, Luo, Jun, Anagnostou, Evdokia, Zwaigenbaum, Lonnie, Ring, Robert H., Wang, Jian, Lajonchere, Clara, Wang, Jun, Shih, Andy, Szatmari, Peter, Yang, Huanming, Dawson, Geraldine, Li, Yingrui, Scherer, Stephen W.
Published in The American Journal of Human Genetics (2013)

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19

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

by Bradnam, Keith R, Fass, Joseph N, Alexandrov, Anton, Baranay, Paul, Bechner, Michael, Birol, Inanç, Boisvert, Sébastien, Chapman, Jarrod A, Chapuis, Guillaume, Chikhi, Rayan, Chitsaz, Hamidreza, Chou, Wen-Chi, Corbeil, Jacques, Del Fabbro, Cristian, Docking, T Roderick, Durbin, Richard, Earl, Dent, Emrich, Scott, Fedotov, Pavel, Fonseca, Nuno A, Ganapathy, Ganeshkumar, Gibbs, Richard A, Gnerre, Sante, Godzaridis, Élénie, Goldstein, Steve, Haimel, Matthias, Hall, Giles, Haussler, David, Hiatt, Joseph B, Ho, Isaac Y, Howard, Jason, Hunt, Martin, Jackman, Shaun D, Jaffe, David B, Jarvis, Erich D, Jiang, Huaiyang, Kazakov, Sergey, Kersey, Paul J, Kitzman, Jacob O, Knight, James R, Koren, Sergey, Lam, Tak-Wah, Lavenier, Dominique, Laviolette, François, Li, Yingrui, Li, Zhenyu, Liu, Binghang, Liu, Yue, Luo, Ruibang, MacCallum, Iain, MacManes, Matthew D, Maillet, Nicolas, Melnikov, Sergey, Naquin, Delphine, Ning, Zemin, Otto, Thomas D, Paten, Benedict, Paulo, Octávio S, Phillippy, Adam M, Pina-Martins, Francisco, Place, Michael, Przybylski, Dariusz, Qin, Xiang, Qu, Carson, Ribeiro, Filipe J, Richards, Stephen, Rokhsar, Daniel S, Ruby, J Graham, Scalabrin, Simone, Schatz, Michael C, Schwartz, David C, Sergushichev, Alexey, Sharpe, Ted, Shaw, Timothy I, Shendure, Jay, Shi, Yujian, Simpson, Jared T, Song, Henry, Tsarev, Fedor, Vezzi, Francesco, Vicedomini, Riccardo, Vieira, Bruno M, Wang, Jun, Worley, Kim C, Yin, Shuangye, Yiu, Siu-Ming, Yuan, Jianying, Zhang, Guojie, Zhang, Hao, Zhou, Shiguo, Korf, Ian F
Published in GigaScience (2013)

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